Supplemental Data : DNA Microarray analysis

gene ƒ˘phoP - /wild - ƒ˘phoQ - /wild - wild + /wild - description
ratio ratio average ratio ratio average ratio ratio average
acrA 0.83 0.55 0.69 0.72 0.60 0.66 0.66 0.63 0.65 Acriflavin_resistance_protein_a_precursor
acrB 0.60 0.76 0.68 0.37 0.61 0.49 0.66 0.68 0.67 Acriflavin_resistance_protein_B
acrE 0.45 0.66 0.55 N.D. N.D. N.D. N.D. N.D. N.D. Acriflavin_resistance_protein_e_precursor_(EnvC_protein)
ais 0.51 N.D. 0.51 N.D. N.D. N.D. N.D. N.D. N.D. Aluminium-inducible_protein
argB 0.72 0.71 0.72 0.66 0.83 0.74 0.65 0.44 0.54 Acetylglutamate_kinase_(EC__2.7.2.8)
argD 0.55 N.D. 0.55 N.D. N.D. N.D. N.D. N.D. N.D. Acetylornithine_aminotransferase_(EC__2.6.1.11)_(acoat)
aroC 0.78 0.61 0.70 0.74 0.61 0.67 0.33 N.D. 0.33 Chorismate_synthase_(EC__4.6.1.4)_(5-enolpyruvylshikimate-3-phosphate_phospholyase)
aspC 0.58 0.61 0.60 0.68 0.49 0.58 0.57 0.49 0.53 Aspartate_transaminase_(EC__2.6.1.1)
atpA 0.74 0.65 0.69 0.70 0.70 0.70 0.45 0.44 0.44 ATP_synthase_alpha_chain_(EC__3.6.1.34)
atpG 0.62 0.67 0.65 0.57 0.66 0.62 0.37 0.32 0.34 ATP_synthase_gamma_chain_(EC__3.6.1.34)
bioB 0.67 N.D. 0.67 N.D. N.D. N.D. N.D. N.D. N.D. Biotin_synthetase_(EC__2.8.1.-)
carA 0.67 0.61 0.64 0.42 0.40 0.41 0.21 N.D. 0.21 Carbamoyl-phosphate_synthase_small_chain_(EC___6.3.5.5)_(carbamoyl-_phosphate_synthetase_glutamine_chain)
cchA 0.32 N.D. 0.32 N.D. N.D. N.D. N.D. N.D. N.D. CchA_protein_precursor
cheA 0.70 0.74 0.72 0.64 0.73 0.69 0.37 0.46 0.41 Chemotaxis_protein_CheA_(EC__2.7.3.-),_CheY_kinase
cheW 0.62 0.63 0.62 0.66 0.39 0.53 0.53 0.61 0.57 Chemotaxis_protein_CheW,_adapter_protein
citF 0.54 0.74 0.64 N.D. N.D. N.D. N.D. N.D. N.D. Citrate_lyase_alpha_chain_(acyl_lyase_subunit)_(citF)_homolog
cmtA 0.59 N.D. 0.59 N.D. N.D. N.D. N.D. N.D. N.D. PTS_system,_mannitol_(cryptic)-specific_IIBC_component_(EIIBC-(C)Mtl)_(mannitol_(cryptic)-permease_IIBC_component)_(phosphotransferase_enzyme_II,_BC_component)_(EC__2.7.1.69)
codA 0.44 0.43 0.43 0.30 0.30 0.30 0.84 0.59 0.71 Cytosine_deaminase_(EC__3.5.4.1)
crcA 0.47 0.77 0.62 0.46 N.D. 0.46 N.D. N.D. N.D. CrcA_protein
dacC 0.64 0.68 0.66 N.D. N.D. N.D. N.D. N.D. N.D. Penicillin-binding protein 6 precursor (d-alanyl-d-alanine carboxypeptidase)
dfp 0.64 0.53 0.58 0.56 0.55 0.56 0.27 0.26 0.26 Protein_Dfp
dinG 0.69 0.81 0.75 0.56 0.90 0.73 0.46 N.D. 0.46 Probable_ATP-dependent_helicase_DinG_(DNA-damage-inducible_protein_G)
div 0.48 0.64 0.56 0.37 N.D. 0.37 N.D. N.D. N.D. Div_protein
dmsA 0.53 0.58 0.55 0.60 0.42 0.51 0.77 0.56 0.67 Dimethylsulfoxide_reductase_chain_a
dmsB 0.75 0.68 0.71 0.75 0.62 0.69 N.D. N.D. N.D. Dimethylsulfoxide_reductase_(EC__1.8.-.-)_chain_B
emrK 0.66 N.D. 0.66 N.D. N.D. N.D. N.D. N.D. N.D. Multidrug_resistance_protein_K
envR 0.67 N.D. 0.67 N.D. N.D. N.D. N.D. N.D. N.D. Potential_acrEF/envCD_operon_repressor
eutG 0.33 N.D. 0.33 N.D. N.D. N.D. N.D. N.D. N.D. Ethanolamine_utilization_protein_EutG
eutI 0.64 N.D. 0.64 N.D. N.D. N.D. N.D. N.D. N.D. Ethanolamine_utilization_protein_EutI
fadL 0.71 0.63 0.67 0.61 0.64 0.63 0.58 0.53 0.56 Long-chain_fatty_acid_transport_protein_precursor_(outer_membrane_FadL_protein)_(outer_membrane_Flp_protein)
feoA 0.56 0.52 0.54 0.17 0.21 0.19 0.75 0.74 0.74 Iron(II)_transport_system_protein_FeoA
feoB 0.57 0.53 0.55 0.41 0.37 0.39 0.55 0.60 0.58 Iron(II)_transport_system_protein_FeoB
fimZ 0.49 N.D. 0.49 N.D. N.D. N.D. N.D. N.D. N.D. Fimbriae_Z_protein
flgE 0.65 0.77 0.71 0.64 0.56 0.60 0.27 0.29 0.28 Flagellar_hook_protein
flgF 0.75 0.73 0.74 0.44 0.50 0.47 0.28 0.26 0.27 Rod_protein_FlgF
fliD 0.83 0.51 0.67 N.D. N.D. N.D. N.D. N.D. N.D. Flagellar hook-associated protein 2 (Hap2) (filament cap protein)
frdA 0.45 0.40 0.42 0.26 0.31 0.29 0.50 0.45 0.47 Fumarate_reductase_flavoprotein_subunit_(EC__1.3.99.1)
galK 0.59 0.58 0.58 0.56 0.73 0.65 0.49 N.D. 0.49 Galactokinase_(EC__2.7.1.6)
galT 0.63 0.49 0.56 0.69 0.69 0.69 0.15 N.D. 0.15 UDPglucose-hexose-1-phosphate_uridylyltransferase_(EC__2.7.7.12)
gcvT 0.77 0.68 0.73 0.60 0.55 0.58 0.33 0.37 0.35 Aminomethyltransferase_(EC__2.1.2.10)
glpB 0.80 0.51 0.66 0.64 0.54 0.59 0.40 0.38 0.39 Glycerol-3-phosphate_dehydrogenase_(EC__1.1.99.5)_(anaerobic)_chain_B
glpC 0.63 0.65 0.64 0.58 0.58 0.58 0.45 0.41 0.43 Glycerol-3-phosphate_dehydrogenase_(EC__1.1.99.5)_(anaerobic)_chain_C
gppA 0.68 0.64 0.66 0.61 0.66 0.63 0.49 0.44 0.46 Exopolyphosphatase_(EC__3.6.1.11)
guaA 0.60 0.50 0.55 0.15 0.29 0.22 0.45 0.67 0.56 GMP_synthase_(glutamine-hydrolyzing)_(EC__6.3.5.2)
guaB 0.70 0.65 0.68 0.07 0.05 0.06 0.25 0.17 0.21 Imp_dehydrogenase_(EC__1.1.1.205)
gutQ 0.85 0.58 0.72 0.83 0.64 0.73 N.D. N.D. N.D. Probable_ATP-binding_protein_GutQ
helD 0.42 0.54 0.48 0.74 0.57 0.66 N.D. N.D. N.D. Helicase_(EC__3.6.1.-)_IV
hemL 0.32 0.41 0.37 0.35 0.35 0.35 0.41 0.44 0.43 Glutamate-1-semialdehyde_2,1-aminomutase_(EC__5.4.3.8)
hipB 0.25 0.80 0.53 N.D. N.D. N.D. N.D. N.D. N.D. HipB_protein
hmpA 0.67 0.64 0.65 0.61 0.52 0.57 0.53 0.57 0.55 Flavohemoprotein_(haemoglobin-like_protein)_(flavohemoglobin)_(dihydropteridine_reductase_(EC__1.6.99.7))_(ferrisiderophore_reductase_b)
hofG 0.73 0.64 0.68 0.28 0.50 0.39 0.88 0.23 0.56 Putative_general_secretion_pathway_protein_G_precursor_(protein_transport_protein_HofG)
hoxK 0.74 0.52 0.63 0.57 0.57 0.57 0.72 0.58 0.65 Hydrogenase_(EC_1.18.99.1)_small_chain_precursor
hscA 0.78 0.70 0.74 0.53 0.48 0.50 0.49 0.33 0.41 Heat_shock_cognate_protein_66
hybG 0.84 0.56 0.70 N.D. N.D. N.D. N.D. N.D. N.D. HybG_protein
hypD 0.64 N.D. 0.64 N.D. N.D. N.D. N.D. N.D. N.D. Hydrogenase_isoenzymesformation_protein
hypF 0.70 0.67 0.69 0.60 0.72 0.66 0.37 0.53 0.45 Transcriptional_regulatory_protein_HypF
ispA 0.65 0.83 0.74 0.64 0.70 0.67 0.47 0.49 0.48 GERANYLTRANSTRANSFERASE_(EC_2.5.1.10)_(FARNESYL-DIPHOSPHATE_SYNTHASE)(FPP_SYNTHASE)
lacY N.D. 0.56 0.56 N.D. N.D. N.D. N.D. N.D. N.D. Lactose permease
lamB 0.23 0.19 0.21 0.35 0.38 0.36 0.26 0.24 0.25 Maltoporin_precursor_(lambda_receptor_protein)
leuS 0.57 0.82 0.69 0.51 0.48 0.49 0.46 0.43 0.44 Leucine-tRNA_ligase_(EC__6.1.1.4)
lhr 1.01 0.22 0.62 N.D. N.D. N.D. N.D. N.D. N.D. Probable ATP-dependent helicase(EC 3.6.1.-)
lnt 0.42 0.53 0.48 0.53 N.D. 0.53 N.D. N.D. N.D. Apolipoprotein_n-acyltransferase_(EC__2.3.1.-)_(alp_n-acyltransferase)_(copper_homeostasis_protein_cute)
lspA 0.53 0.69 0.61 0.55 0.42 0.48 0.48 0.66 0.57 Lipoprotein_signal_peptidase_(EC_3.4.23.36)_(Prolipoprotein_signal_peptidase)_(Signal_peptidase_II)_(Spase_II)
lytB 0.63 0.78 0.71 0.62 0.52 0.57 0.52 0.67 0.60 penicillin_tolerance_protein_(lytB),_probable_metalloproteinase
malE 0.21 0.18 0.19 0.33 0.48 0.41 0.50 0.55 0.53 Maltose-binding_protein_precursor
malF 0.18 0.20 0.19 0.56 0.59 0.57 0.29 0.29 0.29 Inner_membrane_protein_MalF
malG 0.24 0.41 0.32 0.57 0.64 0.60 0.49 0.42 0.45 Maltose_transport_protein_MalG
malK 0.16 0.15 0.16 0.32 0.32 0.32 0.38 0.37 0.38 Maltose/maltodextrin_transport_ATP-binding_protein_MalK
malM 0.12 0.07 0.10 0.33 0.28 0.30 0.20 N.D. 0.20 Maltose_operon_periplasmic_protein_precursor
malS 0.35 0.40 0.38 0.47 0.49 0.48 0.90 0.55 0.72 Alpha-amylase_(EC__3.2.1.1)_precursor,_periplasmic
menC 0.59 0.40 0.50 0.33 0.21 0.27 0.30 0.41 0.36 O-succinylbenzoate_synthase
metL 0.72 0.69 0.70 0.67 0.74 0.71 0.72 0.62 0.67 MetL_bifunctional_enzyme
mgrB 0.21* 0.17* 0.19* ** ** ** ** ** ** Hypothetical_protein
moeA 0.76 0.67 0.72 0.76 0.55 0.66 0.36 N.D. 0.36 Molybdopterin_biosynthesis_MoeA_protein
nagA 0.55 0.53 0.54 0.59 0.70 0.64 0.52 0.68 0.60 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (NagA)
nagB 0.78 0.50 0.64 0.58 0.50 0.54 0.62 0.57 0.60 Glucosamine-6-phosphate_isomerase_(EC__5.3.1.10)_(glucosamine-6-_phosphate_deaminase)
nanE 0.47 0.40 0.44 0.53 0.61 0.57 0.15 0.36 0.25 ManNAc_epimerase
nanK 0.74 0.65 0.70 0.73 0.67 0.70 0.47 0.43 0.45 ManNAc_kinase
napD 0.89 0.31 0.60 0.43 N.D. 0.43 N.D. N.D. N.D. NapD_protein
narK 0.25 0.27 0.26 0.17 0.14 0.16 0.65 0.61 0.63 Nitrate_transport_protein_NarK
nfi 0.70 0.71 0.71 0.47 0.58 0.53 0.26 0.28 0.27 Endonuclease_V_(EC_3.1.-.-)
nirB 0.21 0.16 0.19 0.06 0.13 0.09 0.48 0.39 0.43 Nitrite_reductase_(NAD(P)H)_large_subunit_(EC__1.6.6.4)
nlp 0.71 0.69 0.70 0.54 0.59 0.57 N.D. N.D. N.D. Ner-like_protein
npl 0.67 0.83 0.75 0.70 0.71 0.71 0.76 0.58 0.67 N-ACETYLNEURAMINATE_LYASE_SUBUNIT_(EC_4.1.3.3)_(N-ACETYLNEURAMINIC_ACID_ALDOLASE)_(N-ACETYLNEURAMINATE_PYRUVATE_LYASE)_(NALASE)
nrdB 0.62 0.59 0.60 0.48 0.45 0.46 0.50 0.23 0.37 Ribonucleoside-diphosphate_reductase_(EC__1.17.4.1)_beta_chain
nrdD 0.63 0.71 0.67 0.71 0.59 0.65 0.55 0.37 0.46 Oxygen-sensitive_ribonucleoside-triphosphate_reductase_(EC__1.17.4.-)
nuoD 0.69 0.65 0.67 0.69 0.68 0.69 0.21 0.22 0.21 NADH_dehydrogenase_I_chain_D_(EC__1.6.5.3)_(NADH-ubiquinone_oxidoreductase_chain_4)_(nuo4)
nuoF 0.44 0.40 0.42 0.54 0.58 0.56 0.20 0.25 0.23 NADH_dehydrogenase_I_chain_F_(EC__1.6.5.3)_(NADH-ubiquinone_oxidoreductase_chain_6)_(nuo6)
nuoG 0.37 0.34 0.35 0.50 0.94 0.72 0.19 0.41 0.30 NADH_dehydrogenase_I_chain_G_(EC__1.6.5.3)_(NADH-ubiquinone_oxidoreductase_chain_7)_(nuo7)
nuoH 0.31 0.27 0.29 0.46 0.47 0.47 0.18 0.17 0.18 NADH_dehydrogenase_I_chain_H_(EC__1.6.5.3)_(NADH-ubiquinone_oxidoreductase_chain_8)_(nuo8)
nuoK 0.39 0.24 0.32 0.40 0.41 0.40 0.12 0.12 0.12 NADH_dehydrogenase_I_chain_K_(EC__1.6.5.3)_(NADH-ubiquinone_oxidoreductase_chain_11)_(nuo11)
nuoM 0.31 0.31 0.31 0.48 0.55 0.52 0.17 0.20 0.18 NADH_dehydrogenase_(ubiquinone)_(EC__1.6.5.3)_chain_4
ompT 0.03 0.04 0.03 0.03 0.06 0.04 0.13 0.17 0.15 Proteinase_VII_(EC__3.4.-.-)_precursor
panB 0.65 0.71 0.68 0.55 0.79 0.67 0.50 N.D. 0.50 3-methyl-2-oxobutanoate_hydroxymethyltransferase_(EC__2.1.2.11)_(ketopantoate_hydroxymethyltransferase)
pdxB 0.69 0.72 0.71 0.63 0.46 0.55 0.68 0.52 0.60 Probable_erythronate-4-phosphate_dehydrogenase_(EC__1.1.1.-)
perM 0.73 0.68 0.71 N.D. N.D. N.D. N.D. N.D. N.D. Putative_permease
pfkA 0.64 0.57 0.60 0.58 0.63 0.61 0.66 0.69 0.67 6-phosphofructokinase
pgmU 0.66 0.70 0.68 0.55 0.79 0.67 0.55 0.74 0.65 Phosphoglucomutase_(EC_5.4.2.2)_(glucose_phosphomutase)
phnE 0.40 N.D. 0.40 N.D. N.D. N.D. N.D. N.D. N.D. Phosphonates_transport_system_permease_protein_PhnE
phnL 0.56 0.75 0.65 N.D. N.D. N.D. N.D. N.D. N.D. HisP-like_nucleotide_binding_protein_PhnL
phoE 0.43 N.D. 0.43 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_protein
phoP 0.22 0.21 0.21 0.67 0.50 0.59 0.34 0.45 0.40 Transcriptional regulatory protein PhoP
phoQ 0.13 0.11 0.12 1.83 1.04 1.44 0.30 0.30 0.30 Virulence membrane protein PhoQ
pmbA 0.80 0.64 0.72 0.66 0.64 0.65 0.73 0.58 0.65 PmbA_protein_(TldE_protein)
ppdB 0.77 0.71 0.74 0.69 N.D. 0.69 N.D. N.D. N.D. Hypothetical_protein
ppx 0.68 0.69 0.69 0.51 0.63 0.57 0.52 0.57 0.55 Exopolyphosphatase_Ppx
prpE 0.47 0.94 0.71 N.D. N.D. N.D. N.D. N.D. N.D. Acetate--CoA_ligase_(EC_6.2.1.1)
purB 0.63 0.64 0.64 0.16 0.20 0.18 0.33 0.33 0.33 Adenylosuccinate_lyase_(EC__4.3.2.2)
purD 0.49 0.52 0.50 0.12 0.18 0.15 0.31 0.24 0.27 Phosphoribosylamine-glycine_ligase_(EC__6.3.4.13)
pykF 0.59 0.62 0.61 0.33 0.38 0.36 0.43 0.48 0.45 Pyruvate_kinase_(EC__2.7.1.40)
pyrB 0.28 0.34 0.31 0.11 0.18 0.15 0.47 0.43 0.45 Aspartate_carbamoyltransferase_(EC__2.1.3.2)_catalytic_chain
pyrI 0.54 0.27 0.40 0.13 0.19 0.16 0.67 0.54 0.61 Aspartate_carbamoyltransferase_(EC__2.1.3.2)_regulatory_chain
rcsF 0.98 0.39 0.69 0.87 0.57 0.72 0.53 N.D. 0.53 RcsF_protein
rfaD 0.66 0.70 0.68 0.62 0.73 0.68 0.61 0.60 0.60 Adp-l-glycero-d-mannoheptose-6-epimerase_(EC__5.1.3.-)
ribD 0.92 0.42 0.67 0.71 0.67 0.69 0.39 0.20 0.29 Riboflavin-specific_deaminase
rob 0.68 0.70 0.69 0.52 0.49 0.51 0.60 0.54 0.57 Right_origin-binding_protein
rpsH 0.77 0.73 0.75 0.39 0.44 0.42 0.32 0.38 0.35 Ribosomal_protein_S8
rstA 0.54 0.46 0.50 0.47 0.29 0.38 0.13 N.D. 0.13 Transcriptional_regulatory_protein_RstA
rstB 0.54 0.39 0.47 0.75 0.51 0.63 0.39 0.28 0.34 Sensor_protein_RstB_(EC__2.7.3.-)
rus 0.43 N.D. 0.43 N.D. N.D. N.D. N.D. N.D. N.D. Holliday_junction_specific_endonuclease_rusA
serC 0.59 0.70 0.65 0.76 0.65 0.70 0.61 0.65 0.63 Phosphoserine_transaminase_(EC__2.6.1.52)
serS 0.58 0.57 0.58 0.42 0.39 0.41 0.48 0.65 0.56 Serine-tRNA_ligase_(EC__6.1.1.11)
sfcA 0.38 0.35 0.36 0.41 0.27 0.34 0.26 0.21 0.24 SfcA_protein
slyB 0.29* 0.27* 0.28* ** ** ** ** ** ** Outer membrane lipoprotein precursor
speG 0.57 0.57 0.57 0.56 0.60 0.58 0.44 0.56 0.50 Spermidine_n1-acetyltransferase_(diamine_acetyltransferase)
srlB 0.72 0.63 0.67 0.68 0.73 0.70 0.57 0.41 0.49 Phosphotransferase_system_enzyme_II_(EC__2.7.1.69),_sorbitol-specific,_factor_III
srlD 0.71 0.50 0.60 0.77 0.66 0.71 0.43 0.31 0.37 Sorbitol-6-phosphate_2-dehydrogenase_(EC__1.1.1.140)_(glucitol-6-_phosphate_dehydrogenase)_(ketosephosphate_reductase)
ssuC 0.72 N.D. 0.72 N.D. N.D. N.D. N.D. N.D. N.D. Putative_aliphatic_sulfonates_transport_permease_protein
sucB 0.31 0.25 0.28 0.75 0.56 0.66 0.10 N.D. 0.10 Dihydrolipoamide_succinyltransferase_component_(E2)_of_2-oxoglutarate_dehydrogenase_complex_(EC__2.3.1.61)
sucC 0.22 0.26 0.24 0.60 0.64 0.62 0.09 0.09 0.09 Succinate-CoA_ligase_(ADP-forming)_(EC__6.2.1.5)_beta_chain
sucD 0.32 0.35 0.34 0.77 0.72 0.74 0.12 0.09 0.11 Succinate-CoA_ligase_(ADP-forming)_(EC__6.2.1.5)_alpha_chain
tag 0.53 0.93 0.73 0.53 0.64 0.58 N.D. N.D. N.D. DNA-3-methyladenine_glycosidase_I_(EC_3.2.2.20)_(3-methyladenine-dna_glycosylase_I
thiI 0.65 0.85 0.75 0.40 0.47 0.43 0.44 0.55 0.50 Thiamin_biosynthesis_protein
tktA 0.70 0.51 0.61 0.61 0.48 0.54 0.20 0.18 0.19 Transketolase_1_(EC__2.2.1.1)_(tk_1)
treC 0.71 0.75 0.73 0.71 0.60 0.65 0.42 0.40 0.41 Trehalose-6-phosphate_hydrolase_(EC__3.2.1.93)_(alpha,_alpha-_phosphotrehalase)
uncD 0.62 0.64 0.63 0.71 0.71 0.71 0.45 0.42 0.44 H+-transporting_ATP_synthase_(EC__3.6.1.34)_beta_chain
uvrB 0.77 0.66 0.71 0.61 0.86 0.73 0.87 0.20 0.54 Excinuclease_ABC_subunit_b
vboR 0.21 0.12 0.17 N.D. N.D. N.D. N.D. N.D. N.D. Bor_protein_precursor
wrbA 0.64 0.72 0.68 0.67 0.55 0.61 N.D. N.D. N.D. Trp_repressor_binding_protein
xylA 0.69 N.D. 0.69 N.D. N.D. N.D. N.D. N.D. N.D. Xylose_isomerase_(EC__5.3.1.5)_(version_1)
(rtcA) 0.63 N.D. 0.63 N.D. N.D. N.D. N.D. N.D. N.D. RNA_3'-terminal_phosphate_cyclase_(EC_6.5.1.4)_(RNA-3'-phosphate_cyclase)
(thiS) 0.64 N.D. 0.64 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_protein
(ybhR) 0.57 N.D. 0.57 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_protein
228#6 (b1008) 0.72 N.D. 0.72 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_protein
228#9 (b1011) 0.60 N.D. 0.60 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_protein
232#7 0.74 0.66 0.70 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical protein
241#16 (b1136) 0.63 0.61 0.62 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical protein
242#1.3 N.D. 0.64 0.64 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical protein
271#7 (b1425) 0.46 0.61 0.54 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_protein
275#2.1 (b1455) 0.33 0.55 0.44 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical protein
408#3 (b2325) 0.64 N.D. 0.64 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_protein
411#13 (b2362) 0.63 N.D. 0.63 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_protein
416#3 (b2389) 0.47 0.39 0.43 0.61 0.63 0.62 0.66 N.D. 0.66 Hypothetical_protein
529#3 0.71 0.68 0.69 0.35 0.35 0.35 0.71 0.65 0.68 Hypothetical_protein
536#1 (b3948) 0.72 N.D. 0.72 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_protein
615#7.1 0.72 0.53 0.62 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_protein
yaaF 0.67 0.64 0.66 0.56 0.67 0.62 N.D. N.D. N.D. Nucleoside_hydrolase
yadL 0.72 N.D. 0.72 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_protein
yaiP 0.75 N.D. 0.75 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_protein
yaiS 0.66 N.D. 0.66 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_protein
ybaD 0.67 0.62 0.64 0.43 0.65 0.54 0.33 0.42 0.38 Hypothetical_protein_(ORF1)
ybbL 0.75 0.63 0.69 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical ABC transporter ATP-binding protein
ybdK 0.06 0.13 0.09 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical protein
ybeQ 0.76 0.61 0.68 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical protein
ybeX 0.66 0.65 0.66 0.75 0.58 0.66 0.39 0.31 0.35 Hypothteical_protein
ybfK 0.57 N.D. 0.57 N.D. N.D. N.D. N.D. N.D. N.D. Hypothteical protein
ybgB 0.49 N.D. 0.49 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_protein
ybiA 0.50 N.D. 0.50 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_protein_(f160)
ybiO 0.71 N.D. 0.71 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical protein
ybjD 0.26 0.27 0.27 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical protein
ybjG 0.12 0.10 0.11 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical protein
ybjX 0.12 0.10 0.11 0.13 0.09 0.11 0.10 0.18 0.14 Hypothetical_protein
ycdX 0.61 0.73 0.67 0.57 0.46 0.52 0.52 0.76 0.64 Hypothetical_protein
ycfK 0.37 N.D. 0.37 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_protein
ycgK 0.72 0.68 0.70 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical protein
ycgZ 0.56 0.76 0.66 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical protein
ydaC 0.58 0.86 0.72 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical protein (ORFH)
ydaT 0.46 0.73 0.59 0.73 N.D. 0.73 N.D. N.D. N.D. Hypothetical_protein
yddK 0.65 0.25 0.45 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical protein
yddP 0.61 0.85 0.73 0.46 N.D. 0.46 N.D. N.D. N.D. Hypothetical_ABC_transporter_ATP-binding_protein
ydfD 0.49 N.D. 0.49 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_protein
ydgA 0.57 0.57 0.57 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical protein (o490)
yefA 0.72 0.64 0.68 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical protein
yefE 0.44 0.42 0.43 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical protein
yefI 0.41 0.57 0.49 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical protein
yeiU 0.77 0.61 0.69 0.61 0.49 0.55 0.36 0.50 0.43 Hypothetical_protein
yfbB 0.52 0.53 0.53 0.45 0.80 0.63 0.56 N.D. 0.56 Hypothetical_protein
yfbL 0.33 0.32 0.33 0.39 0.29 0.34 0.12 0.17 0.14 Hypothetical_protein
yfcS 0.46 0.94 0.70 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_fimbrial_chaperone
yfdC 0.57 N.D. 0.57 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_protein
ygaA 0.71 N.D. 0.71 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_sigma-54-dependent_transcriptional_regulator
ygbO 0.72 0.70 0.71 0.55 0.52 0.54 0.41 0.66 0.53 Hypothetical_protein
ygcQ 0.58 N.D. 0.58 N.D. N.D. N.D. N.D. N.D. N.D. Putative_electron_transfer_flavoprotein_subunit
ygeW 0.23 N.D. 0.23 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_protein
ygeY 0.72 N.D. 0.72 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_protein
ygfF 0.54 0.48 0.51 0.46 0.51 0.48 0.30 0.34 0.32 Hypothetical_oxidoreductase
yggU 0.74 0.55 0.64 0.65 0.61 0.63 0.55 N.D. 0.55 Hypothetical_protein_(o100)
yhcH 0.67 0.70 0.69 0.72 0.76 0.74 0.70 0.64 0.67 Hypothetical_protein_(f154)
yhdY 0.64 N.D. 0.64 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_amino-acid_ABC_transporter_permease_protein
yhfG 0.67 N.D. 0.67 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_protein
yhfP 0.60 0.60 0.60 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_protein
yhgF 0.62 0.68 0.65 0.40 0.55 0.48 0.21 0.26 0.24 Hypothetical_protein
yhiD 0.81 0.67 0.74 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_protein
yhjC 0.60 N.D. 0.60 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_transcriptional_regulator
yhjM 0.91 0.42 0.67 0.54 N.D. 0.54 N.D. N.D. N.D. Endo-1,4-D-glucanase
yhjN 0.27 0.80 0.54 0.67 N.D. 0.67 N.D. N.D. N.D. Hypothetical_protein
yhjT 1.09 0.27 0.68 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_protein
yi44 N.D. 0.13 0.13 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical protein
yiaO 0.67 N.D. 0.67 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_protein
yicO 0.44 N.D. 0.44 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_protein
yifH 0.87 0.61 0.74 0.54 N.D. 0.54 N.D. N.D. N.D. Hypothetical_protein
yigL 0.92 0.57 0.75 0.43 N.D. 0.43 N.D. N.D. N.D. Hypothetical_protein
yiiE 0.42 0.74 0.58 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_protein
yijF 0.43 N.D. 0.43 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_protein_(f205)
yijO 0.54 0.75 0.65 0.75 0.28 0.52 N.D. N.D. N.D. Hypothetical_transcriptional_regulator
yjcE 0.64 0.69 0.66 0.60 0.67 0.64 0.58 0.59 0.58 Hypothetical_protein
yjcQ 0.38 N.D. 0.38 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_protein
yjcR 0.72 0.68 0.70 0.74 0.71 0.72 N.D. N.D. N.D. Hypothetical_protein
yjdB 0.74 0.35 0.55 0.61 N.D. 0.61 N.D. N.D. N.D. Hypothetical_protein
yjfF 0.65 0.66 0.65 0.48 0.82 0.65 0.81 0.60 0.70 Hypothetical_ABC_transporter_permease_protein
yjfK 0.57 N.D. 0.57 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_protein
yjhG 0.63 N.D. 0.63 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_protein
yjjI 0.57 0.35 0.46 0.27 0.60 0.43 0.43 N.D. 0.43 Hypothetical_protein
yjjK 0.69 0.70 0.70 0.48 0.44 0.46 0.59 0.47 0.53 Hypothetical_protein
ylbF 0.71 N.D. 0.71 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_protein
ynfB 0.48 0.51 0.50 0.49 0.54 0.51 0.47 0.36 0.42 Hypothetical_protein
yqeK 0.57 N.D. 0.57 N.D. N.D. N.D. N.D. N.D. N.D. Hypothetical_protein
yraM 0.53 0.60 0.56 0.37 0.48 0.42 0.50 0.60 0.55 Hypothetical_protein_(o678)
yrbC 0.71 0.59 0.65 0.72 0.74 0.73 0.67 0.58 0.63 Hypothetical_protein_(f211)
yrbL 0.12 0.10 0.11 0.15 0.14 0.15 0.55 0.60 0.58 Hypothetical_protein_(o210)
ytfE 0.52 0.38 0.45 0.82 0.52 0.67 N.D. N.D. N.D. Hypothetical_protein
yzzQ 0.38 0.43 0.41 0.45 0.42 0.44 0.27 N.D. 0.27 Unknown_protein_from_2D-page_(spots_t26/pr37)
mgtA was not spotted on DNA microarray used in this experiment.
+ and - mean presence and absence of MgCl2respectably
ƒ˘phoP, WP3022 ; ƒ˘phoQ, WQ3007 ; wild, W3110.
Underlined genes were identified as Mg2+ stimulon
* The data were obtained using E. coli DNA microarray fabricated
by Mori et al., in which N-minimal medium(3) was used.
** No experiments were done.
N. D. : Fluorescent signal too weak for detection.